Helen E. Eisenach

Design-CP: Context Parallelism for Design of Protein Nanoparticles

Lorenzo Tarricone, Helen E. Eisenach, Aiko Muraishi, Charlotte M. Deane

Many all-atom generative protein models can in principle design large multimeric complexes by jointly modelling all chains, but their quadratic token- and atom-pair representations quickly exceed single-GPU memory as the number of chains and residues modelled grows. We introduce…Read more