We present msPCA: an open-source R package for sparse principal component analysis with multiple components. It implements an alternating maximization algorithm to generate a set of sparse loading vectors that collectively explain a large fraction of the variance in a dataset, while remaining non-redundant. The algorithm supports two definitions of non-redundancy: either orthogonality of the loading vectors or zero pairwise correlation between principal components (PCs). In the reported benchmarks, msPCA solves sparse PCA problems with thousands of features, achieving competitive runtimes while producing sparse components with controlled feasibility violations and a high fraction of variance explained.
In many applications of matching, the point clouds to be matched are not merely unstructured sets of points but rather samples from distributions with an intrinsic cluster structure. In such cases, as individual points are often interchangeable within a coherent region, finding a…
We study aggregation of statistical evidence under unknown and potentially complex dependence using group-invariance. Building on permutation-based constructions that treat transformed datasets as exchangeable units, we aggregate evidence across statistics for each transformed da…
High-dimensional categorical data arise in genetics, biomedicine, and the social sciences, yet visualization tools for such data remain far less developed than those for continuous variables. Existing methods either scale poorly, rely heavily on low-dimensional displays detached…
Modern LLM deployments use a number of implementation choices and inference optimizations (e.g., batching, custom kernels, and quantization) on top of fixed weights, so two engines serving "the same model" can produce meaningfully different distributions. We study the problem of…
Gene regulatory networks (GRNs) link transcription factor (TF) proteins to their target genes, yet reconstructing these networks from genome-wide data remains challenging under practical and methodological constraints. Many methods couple modeling assumptions to a specific infere…
We propose one-step and two-step methods for policy learning with retrieval-augmented generation (RAG). We formulate RAG-based action selection under the potential outcome framework. In the two-step method, vector search retrieves action-specific neighboring evidence in an embedd…