arxivcs.LG2026-07-19
DynImmune-BERT: Dynamic Immune Repertoire Modeling with Neural ODE Driven Continuous Transformers
Rong Fu, Yongtai Liu, Xiaowen Ma, Haoyu Zhao, Shuo Yin, Yiqing Lyu, et al.
Longitudinal T cell receptor repertoires contain signals of clonal expansion, contraction, disappearance, and reappearance after immune perturbation. Static repertoire language models usually summarize a sample as a bag of sequences, so the sampling interval, sequencing depth, an…